PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4370_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 260aa    MW: 29279.7 Da    PI: 10.2932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4370_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-065577123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  RrC4370_p1 55 FVCEICNKGFQRDQNLQLHRRGH 77
                89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.2E-65477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.09E-75477No hitNo description
PROSITE profilePS5015710.9495577IPR007087Zinc finger, C2H2
PfamPF121713.5E-55577IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0175577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035525096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-4119152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.09E-7126151No hitNo description
SMARTSM00355180131151IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MPVDLDNSST VSGEASVSST GNQQNPLPKS AAKKKRNLPG MPDPDSETLL ATNRFVCEIC  60
NKGFQRDQNL QLHRRGHNLP WKLRQKSSKE VKKKVYVCPE TSCVHHDPSR ALGDLTGIKK  120
HFCRKHGEKK WKCDKCSKRY AVVSDWKAHS KICGTKEYKC DCGTLFSRRD SFMTHRAFCD  180
ALAEESQSPE ILTRKKHVPD PESLTGSNPI PSSVAPVETR SAKIISPRAI NTKRPVFISF  240
SKYIRVSFLL TVSIRAIFIH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532101e-146AK353210.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-D18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697426.11e-145PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-130IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A078GDB01e-145A0A078GDB0_BRANA; BnaC05g34640D protein
STRINGBra036098.1-P1e-143(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-114indeterminate(ID)-domain 2